All quests I could find with window_time in them. Of course, I might not have every single quest.

EP1 Solo:
- Native Research
- Secret Delivery
- Retired Hunter
- Soul of Steel
- Gallon's Plan
- Rescue From Ragol

EP2 Solo
- Blue Star Memories

EP4 Solo
- Black Paper Deal 1
- Black Paper Deal 2
- Warrior's Pride

EP1 Gov
- 2-3
- 3-2
- 4-2

EP2 Gov
- I know quests here have timers in them, but I don't have any of the ep2 gov quest files.

EP1 Multi
- Toward The Future
- Max Attack 1
- MA4 Series
- Principal's Gift
- White Day
- Mop Up series
- Fragments of Memory
- Rappy Holiday
- Labyrinth Trial
- Rescue from Ragol
- Eden's Savior

EP2 Multi
- Respective Tomorrow
- Reach for the Dream
- East Tower
- West Tower
- Singing by the Beach
- Gallon's Shop (probably for some of the minigames though)
- Beach Laughter
- MA4 Series
- Max Attack 2
- Halloween Quest
- Dream Messenger
- Christmas Quest
- Raid on Central Tower
- Max Attack S
- Gal De Val's Darkness

EP4 Multi
- Point of Disaster
- Login
- BSW
- MA4 Series
- Mop Up series
- Max Attack 3
- RoW